PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.S2IZB
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 202aa    MW: 22111.1 Da    PI: 7.7671
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.S2IZBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.6e-39201191100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pe++red+++sl+yeAear+rdPvyG++g i  lq+++ +l+++la +k
  Aradu.S2IZB  20 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEDQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMLELQHDLAIAK 117
                  6*********************************************************************************************9998 PP

       DUF260  99 ee 100
                  ++
  Aradu.S2IZB 118 DR 119
                  75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.30319120IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3820117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MKKSGGGAIM KGYEPRSSSS CAACKFLKRR CIPNCIFAPY FRSDECKKFA KVHKVFGASN  60
VSKILVEVPE DQREDTVNSL AYEAEARLRD PVYGCIGAIA LLQRKMLELQ HDLAIAKDRL  120
ARYSAVAATA TADATSLITS SSSSSDNIFH FNHSQVSLPP FPEFPSSSDF NDTAAFCHAS  180
SSSSQSFPTT VVDDFIQIPY IF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-47151406131LOB family transfactor Ramosa2.1
5ly0_B1e-47151406131LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.S2IZB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020983031.11e-148LOB domain-containing protein 21-like
RefseqXP_025609131.11e-148LOB domain-containing protein 21
SwissprotQ9SRL82e-63LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A445C5C31e-146A0A445C5C3_ARAHY; Uncharacterized protein
STRINGGLYMA14G06270.12e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.16e-64LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]