PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.S0KU9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 322aa    MW: 36193.4 Da    PI: 7.0571
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.S0KU9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-13132179355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka+iL  A++Y+k+Lq
  Aradu.S0KU9 132 QEHVIAERKRREKLSQRFVALSAMVPGL-----KKMDKASILGDAIKYVKQLQ 179
                  6799************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.923129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-11132179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-18133194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-18133193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-13134183No hitNo description
SMARTSM003531.7E-15135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMEIASSNYL AEFGIEEYSS SFQEYPMMMN SFEEMLDKFE MDMQSMSSAY SETKPPPHQL  60
QSPFNTAMPS RSASPSPPKL ISFEAPSLPN SSNIKNPNLM MDDHIHFSAF FNHDNPPHKV  120
LPATARNPIQ AQEHVIAERK RREKLSQRFV ALSAMVPGLK KMDKASILGD AIKYVKQLQE  180
RVQFLEEEKA RKKTMVESGV AVKRCFVFVE DEDNNENEIS AAAALLDGNC NTLPEIKARV  240
SGKDVLIRIH CHKQECKNSR GAREAAILSV LEKHNLTVHT TTSLPFGNDT LDITILAQMK  300
KECSIRTKDL VGSLRVALTQ FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-15134197972Transcription factor MYC2
5gnj_B3e-15134197972Transcription factor MYC2
5gnj_E3e-15134197972Transcription factor MYC2
5gnj_F3e-15134197972Transcription factor MYC2
5gnj_G3e-15134197972Transcription factor MYC2
5gnj_I3e-15134197972Transcription factor MYC2
5gnj_M3e-15134197972Transcription factor MYC2
5gnj_N3e-15134197972Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERKRRE
2138143RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.S0KU9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963749.10.0transcription factor bHLH18
TrEMBLA0A444ZB120.0A0A444ZB12_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-46bHLH family protein