PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RZ9Z0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 339aa    MW: 37882.6 Da    PI: 9.6023
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RZ9Z0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.6e-30195253259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s  gC ++k+vers +dp+++++tY+geH+h 
  Aradu.RZ9Z0 195 SDLWAWRKYGQKPIKGSPYPRNYYRCSSCkGCVARKQVERSLSDPTMFVVTYTGEHKHA 253
                  799***********************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-30180255IPR003657WRKY domain
PROSITE profilePS5081131.927189255IPR003657WRKY domain
SuperFamilySSF1182905.49E-26189255IPR003657WRKY domain
SMARTSM007743.6E-35194254IPR003657WRKY domain
PfamPF031062.5E-24196252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSNEEDWDLF AIVRSCKAAN NTAQTPQDTT KTSSNSIMST SSTTCLATTT ITAEQNDGPF  60
SSNNFVQPRT NGFQELEQLL NTFNPTITTT TTTTSAHGIN SNNPPTFPDF TAPPSTLGAS  120
TSGFDDRFHH HQQHQQKQHN LLQVQVPQTS TTTSLTLLPS SESQSQSQTQ TPRSRKRKSQ  180
QKKMVCHVTA DNLSSDLWAW RKYGQKPIKG SPYPRNYYRC SSCKGCVARK QVERSLSDPT  240
MFVVTYTGEH KHAKPAHRNS LAGSTRKPST PRLAETQENN DTKNPNNNNK NNSPDEKAQN  300
SSXXXXXXXX XXXXXXXXXX XXXXXXXXXX HNSFFFGGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-181922561578Probable WRKY transcription factor 4
2lex_A2e-181922561578Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967146.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A0B2PIV03e-78A0A0B2PIV0_GLYSO; Putative WRKY transcription factor 27
TrEMBLK7MHZ93e-78K7MHZ9_SOYBN; Uncharacterized protein
STRINGGLYMA16G29561.18e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.19e-47WRKY DNA-binding protein 27