PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RN1PL
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family G2-like
Protein Properties Length: 319aa    MW: 34894 Da    PI: 6.6867
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RN1PLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.95.5e-344296155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Aradu.RN1PL 42 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 96
                 79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4853999IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-324197IPR009057Homeodomain-like
SuperFamilySSF466898.06E-184196IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-254297IPR006447Myb domain, plants
PfamPF002491.3E-94495IPR001005SANT/Myb domain
PfamPF143791.7E-23129175IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MYHQKSVPSS SLIGSNSLVH GSSTMDPGNG DNLSNNPNLA SKQRLRWTHE LHERFVDAVA  60
QLGGPDRATP KGVLRVMGVQ GLTIYHVKSH LQKYRLAKYL PDSSSDEGKK TDKKEAGDML  120
SNLDGSPGMQ ITEALKLQME VQKRLHEQLE VQRQLQLRIE AQGKYLKKII EEQQRLSGVL  180
SDVPGSGIAG QVPEDTCPDP DNKTDPATPD PEKAAKERAP AKSLSNESFS SHHEPLTPDS  240
GSPADSPKGE RSTKRQKVSV EATFSKPDMV LPHQILESSM SSYQQSSTVF LTQDQFDPSL  300
GMSARNSEEL EKVGSGSNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-234299259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-234299259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-234299158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-234299158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-234299158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-234299158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-234299259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-234299259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-234299259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-234299259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-234299259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-234299259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.RN1PL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015959147.10.0myb family transcription factor PHL7 isoform X1
RefseqXP_015959148.10.0myb family transcription factor PHL7 isoform X1
RefseqXP_015959149.10.0myb family transcription factor PHL7 isoform X1
RefseqXP_025694148.10.0myb family transcription factor PHL7 isoform X1
RefseqXP_029153584.10.0myb family transcription factor PHL7 isoform X1
RefseqXP_029153585.10.0myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW01e-113PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A445DJ310.0A0A445DJ31_ARAHY; Uncharacterized protein
STRINGXP_004486394.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-91G2-like family protein