PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QR8QC
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 435aa    MW: 47853.3 Da    PI: 7.9481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QR8QCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Aradu.QR8QC  6 FVCEICNKGFQRDQNLQLHRRGH 28
                 89*******************88 PP

2zf-C2H215.84.1e-0582104123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H++t+
  Aradu.QR8QC  82 WKCDKCSKRYAVQSDWKAHLKTC 104
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.33E-8528No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.7E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355824777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.33E-877102No hitNo description
SMARTSM003558182102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVKKRVYVCP EPTCVHHNPS  60
RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH LKTCGTREYK CDCGTIFSRR  120
DSFITHRAFC DALTEENNKL SSTHQGLLTT GMPPSQIPLT TSSSSSDQLF ITDPPLIIPT  180
TTPFNNSIFS STTTSSSCSS STLQLSSSGF NNVILSNPSS SSSPHMSATA LLQKAAQMGA  240
TASNNSMNYS PMMQKSFSMG TTTMAGVVSG GHDAAFTNQL FQKEIVSSQL FDANTTTNSS  300
SNNDMGMYGQ MFMGTITSNN NNNGLMKISS DVEQEISDDD NNNNNNNNTI MVEASRFGGG  360
SGRDDDIATV HDFLGIGGAS SIASTATVSL HESEQQQRLV AETLNQQRLQ IMNHFHHHIP  420
HHAADSAIDK TMWDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-3678142367Zinc finger protein JACKDAW
5b3h_F2e-3678142367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QR8QC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020982077.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ63e-98IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A445CMC90.0A0A445CMC9_ARAHY; Uncharacterized protein
STRINGXP_007163889.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-94indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]