PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QK4C3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 309aa    MW: 32509.7 Da    PI: 5.7119
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QK4C3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.1e-10159203554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Aradu.QK4C3 159 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 203
                  99***********************55......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-15152213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-15156213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-7159203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MANRHPSEAP AADDFLEQIL GLPNFASADS TLAGGTGASS LAAAAAAAAA ASPAAPMMLQ  60
LSSDDASAAY LVGATAGGGF HPPPVYELGL SLEQGNGGGF LKPEDASGSG KRFRDDVVDG  120
RAKNVFHGQP MPTTVPAAPH PPGMRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL  180
VPSVNKTDRA AMLDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTDIPL SSVEEEGGEG  240
RNQPAWEKWS NDGTERQVAK LMEENVGTAM QFLQSKALCI MPISLASAIY QSQPPDTSSI  300
VKPETNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QK4C3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948516.10.0transcription factor UNE12 isoform X1
RefseqXP_025643245.10.0transcription factor UNE12 isoform X1
SwissprotO227681e-127UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A445AEH10.0A0A445AEH1_ARAHY; Uncharacterized protein
STRINGGLYMA19G34360.11e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-118bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]