PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QK1RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 252aa    MW: 30046.6 Da    PI: 10.253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QK1RAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.4e-062850123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Aradu.QK1RA 28 FTCEICNKGFQRDQNLQLHKRGH 50
                 89******************988 PP

2zf-C2H213.90.0001688110123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Aradu.QK1RA  88 WKCEKCSKKYAVQSDWKAHSKTC 110
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-62750IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.69E-72750No hitNo description
PROSITE profilePS5015711.0532850IPR007087Zinc finger, C2H2
PfamPF121712.2E-52850IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0142850IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-478109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.69E-783108No hitNo description
SMARTSM0035514088108IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MFFLLICSDP YVEVIALSPK SLLATNRFTC EICNKGFQRD QNLQLHKRGH NLPWKLKQRT  60
SKEIRKKVYM CPKPSCVHHD LKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTREYICDCG  120
TLFLRLHSPQ RKTMAKKRER HNELLHRKLF MPPETTNLFN DKNSYRKLSE IVDQAKRRAE  180
VVRLRELHTL NYSNGISFSF RKDPSFKPQG GQLRENDMDY DTDENSMATL RRHLRGATEE  240
YYRYKRWRDI GQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-2184128347Zinc finger protein JACKDAW
5b3h_F2e-2184128347Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15466KLKQRTSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QK1RA
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9ZWA62e-67IDD3_ARATH; Zinc finger protein MAGPIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.18e-59C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]