PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QH23N
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 185aa    MW: 20473.7 Da    PI: 8.9713
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QH23NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.54.1e-285107198
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C++lr++C++dCv++p++     p++q++++ +++k++G++ +l+l++a+p++  +++++sl+yeA+ r+ +P yG++g+++++q+  +++++ 
  Aradu.QH23N   5 SCNGCRILRKGCNDDCVIRPCLqwinsPESQANATLFLAKFYGRTGLLNLITAAPKNLAPAVFRSLLYEACGRIVNPAYGSMGLFWTGQWARCEAAVR 102
                  6********************************************************************************************99988 PP

       DUF260  94 lallk 98 
                  ++l++
  Aradu.QH23N 103 AVLMG 107
                  77665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.334110IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-235103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MMKISCNGCR ILRKGCNDDC VIRPCLQWIN SPESQANATL FLAKFYGRTG LLNLITAAPK  60
NLAPAVFRSL LYEACGRIVN PAYGSMGLFW TGQWARCEAA VRAVLMGSKP NDDVAPFHSP  120
SWGSCDIRHV PRLNTGLVDV RDRTGKIFKP QPRVALLDSD VLSQIQPNRA TKETEINLEL  180
SLGFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QH23N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941825.21e-137LOB domain-containing protein 40
RefseqXP_025620675.11e-137LOB domain-containing protein 40
SwissprotQ9CA304e-57LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A444XUW51e-133A0A444XUW5_ARAHY; Uncharacterized protein
TrEMBLA0A445BEI81e-133A0A445BEI8_ARAHY; Uncharacterized protein
STRINGGLYMA20G24950.11e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-59LOB domain-containing protein 42