PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Q8Q5Z
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 557aa    MW: 62672.1 Da    PI: 8.2024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Q8Q5ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.4e-12391437455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I++Lq
  Aradu.Q8Q5Z 391 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIVHINELQ 437
                  799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-2535161IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142151.0E-8163201IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.463387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17390452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-13390441No hitNo description
Gene3DG3DSA:4.10.280.108.4E-17391453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9391437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-15393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MVMKILGKCA FDYLASNSFI TNESMLMATG SFENLQNKLS DLVERPNLNN FSWNYAIFWQ  60
FSQSKFKKDC VVLGWGDGCC REPIEGEEER EALRLGFDDD EVVQRMRKRV LQKLHTVFNG  120
SEEENENYAF GLDRVTDTEM FFLASMYFSF PKGYGGPGKC FELAGIKTVV LVPTELGVVE  180
LGSVRIVDEN LDLLKAVYSV FSSSFAHSSS FNDVVNVKGD EKNRFFCGLD VGNWDRDRDI  240
RVRDHRVEGV PVPKIFGKEL NVGNLNSGGK NFREKVVVRK IEEKKSWNGY PNGNNGIRFL  300
NNARDGVNGS RSWEVNQGLS QGCLGGVFPP IPRSCPRSQS FGRSIVGECE ISNRDSSHKE  360
EKPEEKPSTT QEKRPKKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM  420
DKASLLGDAI VHINELQAKL KALEYEKSTL ESTSKASLPG IEANLRDRTC SFKVDIEADQ  480
DGVIVKVSCP IDLHPTSKLI QALKDSKMSI LESKFNATND HVFHTFVIKS HASEQLTKEK  540
VIAAISGESN SRKLIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-28385447264Transcription factor MYC2
5gnj_B4e-28385447264Transcription factor MYC2
5gnj_E4e-28385447264Transcription factor MYC2
5gnj_F4e-28385447264Transcription factor MYC2
5gnj_G4e-28385447264Transcription factor MYC2
5gnj_I4e-28385447264Transcription factor MYC2
5gnj_M4e-28385447264Transcription factor MYC2
5gnj_N4e-28385447264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372380KRPKKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.Q8Q5Z
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181554.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ21e-167MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A445ACC50.0A0A445ACC5_ARAHY; Uncharacterized protein
STRINGXP_004510665.11e-180(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.14e-61ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]