PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Q80P2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 796aa    MW: 88632.6 Da    PI: 6.3441
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Q80P2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23129230199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  Aradu.Q80P2 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 222
                  99*****************************8544444..48************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Aradu.Q80P2 223 LLLGIRRA 230
                  9****997 PP

2Auxin_resp120.99.4e-40255338183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+v+YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Aradu.Q80P2 255 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338
                  79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-49113258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-41122244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-21128229No hitNo description
PfamPF023621.0E-21129230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.379129231IPR003340B3 DNA binding domain
SMARTSM010193.4E-24129231IPR003340B3 DNA binding domain
PfamPF065076.5E-35255338IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MKLSTSGLPQ QGQHEGGEKK CLNSELWHAC AGPLVSLPTA GTRVVYFPQG HSEQVAATTN  60
REVDGHIPNY PSLPPQLICQ LHNVTMHVDV ETDEVYAQMT LQPLTPQEQK DTFLPMELGV  120
PSKQPSNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPAQELI ARDLHDVEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSCFTVFYN PRASPSEFVI PLSKYIKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGDRQ PRVSLWEIEP  360
LTTFPMYPSL FPLRLKRPWH PGTSSFLDGR DDATNGLMWL RGGAGDQGLN SLNFQTVGML  420
PWMQQRLDPA LLGNDHNQQY QAMLAAGLQN MGSGELLRQQ MMNFQQPFNY LQQPGNVNTP  480
IQLQQQQTIQ QSVTSNILQQ QAPVLTENLS QQLFQKSNNR EDHAQQQHQH QQHTYQDALL  540
VQGDQLHQRQ HSSLPSPSYS KPEFVDGSMK FEGSGSPGQN MLGSLCPEGS SNLLNLSRGG  600
QSIPTEQLPQ QSWPPKYTPL QVNAFSNSMS HVQYSGKDIA VASPHRNSDA QNPTLFGVNI  660
DSSGLLLPTT VPHYTTSSAD TDASTMPLGD SGFQGPLYAC MQDSSELMQS AGQVDPQNQT  720
PTFVKGKLED PLRSGWQLVF VDRENDILLL GDDPWESFVN NVWYIKILSP EDIQKMGEQA  780
VESRDGVPGL PSIGEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611635945388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166216.10.0PREDICTED: auxin response factor 8
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLI1JHQ80.0I1JHQ8_SOYBN; Auxin response factor
STRINGGLYMA02G40650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49582850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8