PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.PK283
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 358aa    MW: 38648.4 Da    PI: 10.2566
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.PK283genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.1e-31287344359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Aradu.PK283 287 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHS 344
                  99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.4E-17237283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-33273344IPR003657WRKY domain
PROSITE profilePS5081130.963280346IPR003657WRKY domain
SuperFamilySSF1182903.4E-27282345IPR003657WRKY domain
SMARTSM007741.3E-38285345IPR003657WRKY domain
PfamPF031063.1E-27287343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAVELMMGGY RNDNSSSGGF ATSKAEENAV QEAASGLESV EKLIRLLSQT QHQHFNGSSS  60
SAVNSDATLS IERDCKAVAD VAVSKFKRVI SLLGRTRTGH ARFRRGPLHA PSQSQTEPFS  120
QEHRVFHATP LQQIPPPPPP PPPPPPPQLQ SLVNHHLIPK NGVLERSSSS KTINFSYSSA  180
ANSFLSSLTG DAAAGESKQQ HHQQQPSSSS PAPAFQITNL SQVSSAGKPP LSSSSLKRKC  240
SSENLGSGKC GSSSSRCHCS KKSRKMRLKR VVRVPAISLK MADIPPDDYS WRKYGQKPIK  300
GSPHPRGYYK CSSVRGCPAR KHVERALDDP SMLVVTYEGE HNHSLTAADA TNLILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-222823471478Probable WRKY transcription factor 4
2lex_A6e-222823471478Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8538270.0EU853827.1 Arachis hypogaea WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015955197.10.0PREDICTED: probable WRKY transcription factor 15
SwissprotO221763e-95WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLB5AK530.0B5AK53_ARAHY; WRKY transcription factor
STRINGGLYMA01G39600.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.12e-50WRKY DNA-binding protein 15