PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.PG28A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 163aa    MW: 18207.5 Da    PI: 10.4648
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.PG28AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.74.4e-34251512125
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnss 86 
                   g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ +             +sss++++          n +
  Aradu.PG28A  25 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLphinnpftnlsgfPSSSSNSM---------INTN 113
                  689*************************************************************665555555553322222222.........2222 PP

          TCP  87 sg..........................kaaksaakskksqksaasalnlakesrakarararer 125
                  ++                          +                           k+++ +  +
  Aradu.PG28A 114 EAstsmfninrsihqwqglaqnyskwnnN---------------------------KSKSSSSTK 151
                  22111222222222444433333222221...........................222221111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.4692785IPR017887Transcription factor TCP subgroup
PfamPF036346.4E-3327155IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVLGVRSDSV VGVQDPRIVR VSRAFGGKDR HSKVCTIRGL RDRRVRLSVP TAIQLYDLQD  60
RLGLNQPSKV VDWLLNAAKH EIDELPPLPH INNPFTNLSG FPSSSSNSMI NTNEASTSMF  120
NINRSIHQWQ GLAQNYSKWN NNKSKSSSST KQASSEDNNQ MVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-193286155Putative transcription factor PCF6
5zkt_B1e-193286155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.PG28A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015962659.11e-106transcription factor TCP13
TrEMBLA0A151RY711e-53A0A151RY71_CAJCA; Transcription factor TCP13
STRINGXP_004499467.11e-52(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-45plastid transcription factor 1