PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.MF3XQ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 941aa    MW: 103869 Da    PI: 5.6059
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.MF3XQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.51.1e-22171269199
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k+lt sd++++g +++p++ ae+    +++++  +l+++d++ ++W++++iy   ++++r++lt+GW+ Fv +++L++gD+v+F   ++++ +l+v
  Aradu.MF3XQ 171 FCKTLTASDTSTHGGFSVPRRAAEKLfpPLPPTQ--ELVVRDLHDNTWTFRHIYrgGGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQLRV 264
                  99*********************99998777766..8*****************66667777*************************..4577778** PP

                  EEE-S CS
           B3  95 kvfrk 99 
                  +v+r 
  Aradu.MF3XQ 265 GVRRV 269
                  **985 PP

2Auxin_resp113.81.6e-37294377183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaas++ +F+++YnPra++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+++
  Aradu.MF3XQ 294 AAHAASNRIPFTIFYNPRACPSEFVIPLAKYRKSVYgTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQ 377
                  79**********************************9********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-43159297IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-37164282IPR015300DNA-binding pseudobarrel domain
CDDcd100176.83E-22170268No hitNo description
SMARTSM010191.6E-24171270IPR003340B3 DNA binding domain
PfamPF023623.8E-20171269IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943171270IPR003340B3 DNA binding domain
PfamPF065073.0E-32294377IPR010525Auxin response factor
PfamPF023097.4E-11832922IPR033389AUX/IAA domain
PROSITE profilePS5174523.746835919IPR000270PB1 domain
SuperFamilySSF542775.3E-8839914No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 941 aa     Download sequence    Send to blast
MDHGCCSSIS ISVGMKLIES GAALMASLEE KVKTCGVGVV GGQTLVAEMK LLKEMQEHSG  60
VRKTLNSELW HACAGPLVSL PQVGSLVYYF PQGHSEQVAA STRRTATSQI PNYPNLPSQL  120
LCQVQNVTLH ADKDTDEIYA QMSLQPLNSE KDVFPISDFG LKHSKHPTEF FCKTLTASDT  180
STHGGFSVPR RAAEKLFPPL PPTQELVVRD LHDNTWTFRH IYRGGGQPKR HLLTTGWSLF  240
VGSKRLRAGD SVLFIRDEKS QLRVGVRRVN RQQTTLPSSV LSADSMHIGV LAAAAHAASN  300
RIPFTIFYNP RACPSEFVIP LAKYRKSVYG TQLSVGMRFG MMFETEESGK RRYMGTIVGI  360
SDLDPLRWPG SKWRNIQVEW DEPGCGDKQN RVSVWEIETP ESLFIFPSLT SSLKRPLQSG  420
FLENDWGALI RRPYIRVPEN GATELANSMP NIYSEHLMKM LLKPQLINNN GAMAMQQESV  480
AMRGTLQDAK TTQAPENHKV NLASTENLPL KNLYSQSVPE QANVVNLHSQ AKNDNHMSSG  540
TVIDKPKLEP EVLNDQMYEI PSGGTGTNIE KVASNPANSQ SVANQLAFLN QNQSHPLAQS  600
GSWPIQPQLE SSVSHPQLVD MPQGDSAIAN SMLPQLDIDE WMVYSSNQTF ANQNRSTGPV  660
SDFQEHSAAL QPQVVNPSMP MNQEVWDQYV KNFKLLSQVD QMTSVCQPGM YSLNGISSSN  720
NLRDLSAESN NQSEICVDVS NSVNTTMVDP STSSTILDEY CTLKERDFQN PQDCIVGNLS  780
SSQDVQSQIT SASLTESHAF PLQDNSGGTS SSHVDFDESS FLQNNSWQPV AAPVRTYTKV  840
QKAGSVGRSI DVTTFKNYEE LIRAIECMFG LDGLLNDTKG SGWKLVYVDY ESDVLLVGDD  900
PWEEFVGCVR CIRILSPSEV QQMSEEGMKL LNSGALQGIN V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.0244021392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969856.10.0PREDICTED: auxin response factor 5
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLI1MC560.0I1MC56_SOYBN; Auxin response factor
STRINGGLYMA14G40540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein