PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.MCI5M
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 261aa    MW: 26940.3 Da    PI: 7.0299
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.MCI5MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.12e-4030128198
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l
  Aradu.MCI5M  30 PCGACKFLRRKCVPGCIFAPYFDSEQgATHFAAVHKVFGASNVSKLLMNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQIVNLQAELSYL 127
                  7***********************9989*******************************************************************998 PP

       DUF260  98 k 98 
                  +
  Aradu.MCI5M 128 Q 128
                  7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.24429131IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-4030128IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MNTSCSGSPS GGGGGGSSSG GGGSSGGGGP CGACKFLRRK CVPGCIFAPY FDSEQGATHF  60
AAVHKVFGAS NVSKLLMNIP VHKRLDAVVT ICYEAQARLR DPVYGCVAHI FALQQQIVNL  120
QAELSYLQGY LATLELPHPP QLPPTPPQPT LAPPTLSISD LPPPHPTPAS TATVPITYDL  180
SSLFEPMAQT SWAMHNRPID APRQFLSSDT SSLQSSGDGG DGGGGGDLQT LAHELLRRHG  240
VDPTAPVACS SAPSSSQSHS K
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015950854.10.0PREDICTED: LOB domain-containing protein 18
SwissprotO221317e-77LBD18_ARATH; LOB domain-containing protein 18
TrEMBLI1JKK95e-97I1JKK9_SOYBN; Uncharacterized protein
STRINGGLYMA03G02620.11e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.13e-63LBD family protein