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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.MA5WH | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HSF | ||||||||
Protein Properties | Length: 387aa MW: 44452.7 Da PI: 5.5499 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.6 | 6.3e-36 | 56 | 148 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+i+ed+++++++sws+ +nsfvv+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgFkkv+ ++ weF+++ F +g++ ll++ik Aradu.MA5WH 56 FLTKTYDIVEDPSTNHIVSWSKGNNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEMFLRGQRVLLKNIK 143 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Aradu.MA5WH 144 RRKTN 148 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.06E-35 | 51 | 145 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.6E-39 | 52 | 145 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.3E-60 | 52 | 145 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.3E-19 | 56 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.2E-31 | 56 | 145 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.3E-19 | 94 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 95 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.3E-19 | 107 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MNPDDHGVGR VMKEEYLGEG SCSFSYPMVV DVPPPPPPAP PPHPMEGLNE SGPPPFLTKT 60 YDIVEDPSTN HIVSWSKGNN SFVVWDPQAF SITLLPRFFK HNNFSSFVRQ LNTYGFKKVD 120 PDRWEFANEM FLRGQRVLLK NIKRRKTNQT HHHHQQGLDP CVEVGRFGGL DGELNRLRRD 180 RQVLMAELVK LRQQQQTTKS QIQAMEVKLR KTEQKQQQMM TFMARAMQNP NFVQQLVQQK 240 DWRKELEEAF SNKRMRPIHQ GPSNNNVEVA VGYHDGLLGF VDEDCSTFIK LESHIDDDDD 300 NDNKFDFEVS EMDLLGLNVK GQSSSEYHHN HAQVGVSRNN NNNNNIDEVF WEDLLNEGFE 360 DEHVLAAAED VDVLAEQLGY LASSPHK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-25 | 47 | 147 | 17 | 131 | Heat shock factor protein 1 |
5d5v_B | 4e-25 | 47 | 147 | 17 | 131 | Heat shock factor protein 1 |
5d5v_D | 4e-25 | 47 | 147 | 17 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 144 | LKNIKRR |
2 | 175 | 180 | RLRRDR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015941402.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 1e-128 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A0B2Q7H8 | 1e-158 | A0A0B2Q7H8_GLYSO; Heat stress transcription factor A-6b | ||||
TrEMBL | I1NGK0 | 1e-158 | I1NGK0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G28870.1 | 1e-158 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-111 | heat shock transcription factor A6B |