PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.MA5WH
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 387aa    MW: 44452.7 Da    PI: 5.5499
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.MA5WHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.3e-36561482103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+i+ed+++++++sws+ +nsfvv+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g++ ll++ik
   Aradu.MA5WH  56 FLTKTYDIVEDPSTNHIVSWSKGNNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEMFLRGQRVLLKNIK 143
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Aradu.MA5WH 144 RRKTN 148
                   **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.06E-3551145IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.6E-3952145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-6052145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-195679IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3156145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-1994106IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434095119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-19107119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MNPDDHGVGR VMKEEYLGEG SCSFSYPMVV DVPPPPPPAP PPHPMEGLNE SGPPPFLTKT  60
YDIVEDPSTN HIVSWSKGNN SFVVWDPQAF SITLLPRFFK HNNFSSFVRQ LNTYGFKKVD  120
PDRWEFANEM FLRGQRVLLK NIKRRKTNQT HHHHQQGLDP CVEVGRFGGL DGELNRLRRD  180
RQVLMAELVK LRQQQQTTKS QIQAMEVKLR KTEQKQQQMM TFMARAMQNP NFVQQLVQQK  240
DWRKELEEAF SNKRMRPIHQ GPSNNNVEVA VGYHDGLLGF VDEDCSTFIK LESHIDDDDD  300
NDNKFDFEVS EMDLLGLNVK GQSSSEYHHN HAQVGVSRNN NNNNNIDEVF WEDLLNEGFE  360
DEHVLAAAED VDVLAEQLGY LASSPHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-254714717131Heat shock factor protein 1
5d5v_B4e-254714717131Heat shock factor protein 1
5d5v_D4e-254714717131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144LKNIKRR
2175180RLRRDR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941402.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-128HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0B2Q7H81e-158A0A0B2Q7H8_GLYSO; Heat stress transcription factor A-6b
TrEMBLI1NGK01e-158I1NGK0_SOYBN; Uncharacterized protein
STRINGGLYMA20G28870.11e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-111heat shock transcription factor A6B