PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LM0YT
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family G2-like
Protein Properties Length: 422aa    MW: 46779.3 Da    PI: 8.3902
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LM0YTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.12e-334599155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Aradu.LM0YT 45 KPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 99
                 79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.48942102IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-3143100IPR009057Homeodomain-like
SuperFamilySSF466891.97E-1644100IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-2345100IPR006447Myb domain, plants
PfamPF002492.5E-94798IPR001005SANT/Myb domain
PfamPF143792.0E-24149195IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
GVMYHHQGKN MHSSSRMPIP SERHMFLQTG NGSGDSGLVL STDAKPRLKW TPDLHARFIE  60
AVNQLGGADK ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS KNLHGPNNTV THKITTNVGA  120
TTSERSLSEP SGTHMNKLSL VPQTNKDLHI SEALQMQIEV QRRLNEQLEV QRHLQLRIEA  180
QGKYLQSVLE KAQETLGRQN LGMVGLEAAK VQLSELVSKV SSQCLNSAFS ELKELQGFCP  240
KQPQTNQPND CSIDSCLTSC EGSQKEQEIQ NGGIGLRHLN GHGHAFMERK GGTEAPKWSN  300
EVKNNTFLAP LGKNSERSSY GAERSSGNLS MSIGLERETE NGSSMYTESH THTDGEFWHR  360
NSNRTEPKNE AMDGGRGSHD YRLPPPYFSA ARLDLNSHGD NNEAATTTTS CKQLDLNRFS  420
WS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1945101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1945101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1945101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1945101157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LM0YT
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935924.10.0myb-related protein 2-like isoform X4
SwissprotQ9SQQ91e-135PHL9_ARATH; Myb-related protein 2
TrEMBLA0A445BWH30.0A0A445BWH3_ARAHY; Uncharacterized protein
STRINGGLYMA12G31020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-138G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]