PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LAA50
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 487aa    MW: 52680.1 Da    PI: 6.3002
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LAA50genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.95e-24246300259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr    C+s+ gC+++k+vers++dp++++itY++eHnh+
  Aradu.LAA50 246 SDLWAWRKYGQKPIKGSPYPR----CSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 300
                  699***************996....99888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-24240302IPR003657WRKY domain
PROSITE profilePS5081126.911240302IPR003657WRKY domain
SuperFamilySSF1182902.22E-20243302IPR003657WRKY domain
SMARTSM007745.9E-31245301IPR003657WRKY domain
PfamPF031067.7E-19247300IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MCSSSVRAPM ENNNNYKHQG DLTDILRGGP YGGAATASDE PPSSYHWQQQ LENDTTACYF  60
GDPFSTMRDP FLHQLHIPPT SSSSYFEEPP LPPPPLPPPP PTLPTPCYNS YGGAHLQHDM  120
RSSSSSSSSS SSSISCNNIF SNMIQISPST NNTSSSCSSS SSSKLAISSS SSSPPSMLSN  180
VNAMVNATSI PSNKQDCHLL DNASALQISS PRNPALKRRK NQAKKVVCIP APAAANSRQT  240
GEVVPSDLWA WRKYGQKPIK GSPYPRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP  300
WPTQRNALAG STRSQPSKNN TNANIASSKN SETSKVSGNN NKPKEENNNQ QHERGNNNSQ  360
GGSASVVKEE MDHHHHSNHD LELELDNDEE FSDGLSYKPS MIEEGSNNNN QSSEDFFADL  420
GEIEADPLNL LFSSHQGFNA GGGGGGGGDN QRESKALDPF NLFDNWSSGD TNNNNSSFEE  480
PNNKGRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-122473021977Probable WRKY transcription factor 4
2lex_A1e-122473021977Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150388e-51AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015959393.10.0PREDICTED: probable WRKY transcription factor 35
TrEMBLA0A151SBB01e-138A0A151SBB0_CAJCA; Putative WRKY transcription factor 14
STRINGGLYMA09G03451.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.16e-65WRKY DNA-binding protein 35