PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.JIB7P
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 360aa    MW: 41129.4 Da    PI: 7.0759
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.JIB7PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06197216120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C+k+F+r  nL+ H+
  Aradu.JIB7P 197 FSCPLCSKTFNRYNNLQMHM 216
                  89*****************9 PP

2zf-C2H211.90.0007281303123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y C +C ksF  k + ++H +++
  Aradu.JIB7P 281 YLCRKCRKSFAVKGDWRTHEKNC 303
                  56*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.78E-6190219No hitNo description
Gene3DG3DSA:3.30.160.603.3E-5197216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.049197219IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.783197224IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SMARTSM00355280244276IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.91E-6265301No hitNo description
Gene3DG3DSA:3.30.160.602.2E-4268301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035589281301IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTDPQSNSLD DDGFFNFMPL HPPHHSSSSS SQSNLHPFAY LNTRFHHQQQ QSEASSSSSE  60
YLLPTNSNSP PLKEALPLIN KLSLTNHQQN NHKGALPYPD SINYENEDED EEEDNETVAV  120
ALRIGLPRID TSYDLQPSTK EAMADEKQQQ EQVNNNNVFS GNPFERFNNN NNNNINNNKS  180
HYWIPTPSQI LIGPTQFSCP LCSKTFNRYN NLQMHMWGHG SQYRKGPDSL KGTQPTAMLR  240
LPCFCCEQGC KHNIDHPRAR PLKDFRTLQT HYKRKHGIKP YLCRKCRKSF AVKGDWRTHE  300
KNCGKVWYCL CGSDFKHKRS LKDHIRAFGD GHGAFGIQSL HEFEDEAPSE AEHDGESSSL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.JIB7P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015937176.10.0zinc finger protein WIP2
SwissprotQ8W0311e-111ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A445BZW20.0A0A445BZW2_ARAHY; Uncharacterized protein
STRINGGLYMA12G36660.21e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]