PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.IA6VW
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 256aa    MW: 28335.2 Da    PI: 5.8097
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.IA6VWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.13.6e-3971071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp  +r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+l
  Aradu.IA6VW   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVGDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYL 104
                  7*************************89*********************************************************************9 PP

       DUF260  98 kee 100
                  ke+
  Aradu.IA6VW 105 KEQ 107
                  987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.8756108IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-377105IPR004883Lateral organ boundaries, LOB
PROSITE patternPS000180132144IPR018247EF-Hand 1, calcium-binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPVGD  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LAYLKEQAAQ QSCVNGGNPN  120
NERYFDKPNI ADNNNNNFIT PQDLQSWLFN MENSSSSNLG GLESLHPNLC NNNDSSYNGI  180
SDGNNNNNNV NNSMMMMMDL KPINNNGSYY ENSNSFSSFE ESSSNSMSYE METNGGTKWS  240
FHEVDDLHSV AFGYRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3531207124LOB family transfactor Ramosa2.1
5ly0_B5e-3531207124LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.IA6VW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948664.10.0LOB domain-containing protein 29-like
TrEMBLA0A445EFM10.0A0A445EFM1_ARAHY; Uncharacterized protein
STRINGGLYMA13G18210.11e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-56lateral organ boundaries-domain 29