PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.I7259
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 485aa    MW: 53531.9 Da    PI: 9.3384
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.I7259genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-0583105123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Aradu.I7259  83 FVCEICNKGFQRDQNLQLHRRGH 105
                  89*******************88 PP

2zf-C2H211.60.00086159181123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H +t+
  Aradu.I7259 159 WKCDKCSKIYAVQSDWKAHSKTC 181
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-782105No hitNo description
Gene3DG3DSA:3.30.160.601.6E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01783105IPR015880Zinc finger, C2H2-like
PfamPF121717.7E-583105IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94983105IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355170124154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-4147180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.21E-7154179No hitNo description
SMARTSM00355180159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MFPAVMSNST SLSEEASVSS GTRIQDFGAT LNHVVSTISP HQQQQQQQPP QKIKKKRSLP  60
GNPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNNKEVK  120
KRAYVCPEPS CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CDKCSKIYAV QSDWKAHSKT  180
CGTREYRCDC GTLFSRKDSF ITHRAFCDAL AEESARVSAN QHQLITTPSN PLLQSLFLFP  240
TQNNFINPWD PQSSQENPNP NNNNTLLHNI NIKPEVQNFH IPNSDNAPPL FLHQNPSKNN  300
TIMMTSPFRN NPHVRMQPQS NSANNAAAAA TSAHLSATAL LQKAATVGAA AITGPNASLG  360
VGQHVTRHVT ELGDMTQLDS VHFMNNMGVG GFNNNTRSLK SSDDLTRDFL GLTGDNNGGR  420
GGSCDGGNAG AVDVSMNVKD MLTYTGNIDY QQQHHHHLRH PLFKSPQQGF GFLGTTTAPE  480
SWGNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35155219367Zinc finger protein JACKDAW
5b3h_F1e-35155219367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.I7259
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948550.10.0protein indeterminate-domain 12
SwissprotO227591e-125IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A371FZ550.0A0A371FZ55_MUCPR; Protein indeterminate-domain 12
STRINGGLYMA10G03541.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-112indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]