PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.H802V
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 133aa    MW: 14421.5 Da    PI: 8.9864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.H802VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.1e-0636751155
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Aradu.H802V 36 IRKEKLGDRIAALQQLVAPF-----GKTDTASVLLEAIGYIKFLQ 75
                 67789999*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.7192574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-113586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.63E-63579No hitNo description
Gene3DG3DSA:4.10.280.104.2E-93982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MMVETKRSSS TLMESSNASK KSRPQSSRSS CQHLKIRKEK LGDRIAALQQ LVAPFGKTDT  60
ASVLLEAIGY IKFLQSQVEV SARDNIMNSE AKHEDLRSRG LCLVPMSCMA YIAGDDGGGC  120
GAWQQPPNFG GPT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.H802V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025607307.12e-87transcription factor bHLH110
SwissprotQ9SFZ32e-36BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A444YGF32e-72A0A444YGF3_ARAHY; Uncharacterized protein
STRINGPOPTR_0002s03380.12e-45(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-34bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]