PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.GMN2P
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 573aa    MW: 65041.5 Da    PI: 5.237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.GMN2PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68e-12391434755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   +Er+RR+++N+++ +Lr+l+P  +      Kl+ a+iL  A+e++k+Lq
  Aradu.GMN2P 391 VAERKRRKKLNDRLYNLRSLVPRiS------KLDRASILGDAIEFVKDLQ 434
                  68*********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.3E-1766203IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.54E-13383438No hitNo description
PROSITE profilePS5088815.294384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16387448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-15390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9391434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16391449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.002517560No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MDLSFCFSCF LFVCYSISLL LVLVKGIISS ILKHFAFGSS KKDFYYHLLP SGDKNMNMMM  60
MQNLIERLRP LVGLNGWDYC VYWKLSEDQR FVEWLGCCCG GTDQNNNVGE DIHIFPCRDT  120
MFSHPRTNHC YLLSQLPTSI SIIDSGIHAQ TLLTNQPNWV NYSPNILQET IGTQVLIPVP  180
GGLVELFVTK QVPEDHQVID FVTAQCIVLV EQEAANNSTS FNMQSNVVGD DNNNNHNNNN  240
NENQVMMNNN NNSNNQFVLT TAPETSPHDE IPITLCSSPL NFMQQFRTMN KNNDNNNNNN  300
AFSEEYQGSI FLHENQNNNN QPMKAAAMEE EEEEEQQVGT KENNNNNKNE GGVVGVGRSD  360
SMSDCSDQNE EEEDGKYRRR NGKGNQSKNL VAERKRRKKL NDRLYNLRSL VPRISKLDRA  420
SILGDAIEFV KDLQKQVKDL QDELEDNNNN SDTTAVDHHD SSNQFLDHFG ASYVVPNHKH  480
MQQDAVDATT LTMDKQHSQQ MEPQVEVAVI DGKEYFVKVF CEHRAGGFVK LMEALNTLGM  540
DVVHATVTSH KGLVSNVFKV EVRYHLTHHS KQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377398RRRNGKGNQSKNLVAERKRRKK
2392399ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.GMN2P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941767.20.0transcription factor ABORTED MICROSPORES
TrEMBLA0A444XUI70.0A0A444XUI7_ARAHY; Uncharacterized protein
STRINGXP_004497179.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.18e-58bHLH family protein