PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.GFT3R
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 258aa    MW: 28369.6 Da    PI: 7.4826
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.GFT3RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.22.7e-38371381101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ el+++
  Aradu.GFT3R  37 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHEAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQGELSMV 134
                  7***********************9989********************************************************************** PP

       DUF260  98 keel 101
                  +++l
  Aradu.GFT3R 135 QNQL 138
                  9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.66836138IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-3837135IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSERQGVGDH GTNSGTRRKG AATKRAMAVA AAATVPPCGA CKFLRRKCIS GCIFAPHFGS  60
DQGAARFAAV HKVFGASNVS KLLLHIPVNR RHEAVVTISY EAQARLSDPV YGCVSTILAL  120
QQQVASLQGE LSMVQNQLIN SRFAYANVLH QCTQQHHHHH HHDNNQPNMI NVSLLQQPAY  180
SNNNSSASTN NNLVNMNTFN NNNNNHSGFE LAMEAAPSSP PHSFEPLRLS QENNDEDDEE  240
ESIIIPQLFN HEIVLHRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-36311401113LOB family transfactor Ramosa2.1
5ly0_B4e-36311401113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.GFT3R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015970869.10.0LOB domain-containing protein 20-like
SwissprotQ9SRV36e-74LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A444YQV20.0A0A444YQV2_ARAHY; Uncharacterized protein
STRINGcassava4.1_028764m2e-90(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-66LOB domain-containing protein 20