PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.G4IDA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 256aa    MW: 28681.9 Da    PI: 9.6544
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.G4IDAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.3e-3084142259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
  Aradu.G4IDA  84 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVVTYSCEHNHP 142
                  69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3178144IPR003657WRKY domain
SuperFamilySSF1182905.49E-2680144IPR003657WRKY domain
SMARTSM007743.6E-3583143IPR003657WRKY domain
PROSITE profilePS5081132.16884144IPR003657WRKY domain
PfamPF031069.1E-2685142IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDSKLRNRSS RSSRNLYMKE QEDNDGSDSP PSNSTLFNID ALVTSSPSSS SKRRRGVEKR  60
VVHIRIKEGE GPRLKGENNT PPPSDSWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ  120
VERSRVDPTM LVVTYSCEHN HPWPSSRNHN RSSTKKPQPS AEDLLVDPVE PDLEGHDSII  180
HDLGWFRDIS GALTPSLPAV LDSPIFSGYD DADVAASVVL PMGDDEESLF ADQDRKKKKR  240
KKRREMGTSG DEKGNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-18841441574WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239RKKKKR
2234244RKKKKRKKRRE
3235240KKKKRK
4235242KKKKRKKR
5235243KKKKRKKRR
6237241KKRKK
7237243KKRKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015958125.11e-170PREDICTED: probable WRKY transcription factor 65
SwissprotQ9LP563e-59WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A0L9TKB02e-81A0A0L9TKB0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TD412e-81A0A0S3TD41_PHAAN; Uncharacterized protein
STRINGGLYMA08G12460.13e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-57WRKY DNA-binding protein 65