PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.FQ6XD
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 278aa    MW: 31432.8 Da    PI: 6.5144
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.FQ6XDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-1749101456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  + +++ eq+++Le+ Fe  +++  e++ +LAk l+L+ rq+ +WFqNrRa++k
  Aradu.FQ6XD  49 KKRLNIEQVKALEKSFELGNKLEPERKVQLAKALNLQPRQIAIWFQNRRARWK 101
                  4568889*********************************************9 PP

2HD-ZIP_I/II124.83.9e-4047139193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekk+rl+ eqvk+LE+sFe  +kLeperKv+la++L+lqprq+a+WFqnrRAR+ktkqlE++ye+Lk++++alk +n++L+ ++++L++el++
  Aradu.FQ6XD  47 EKKKRLNIEQVKALEKSFELGNKLEPERKVQLAKALNLQPRQIAIWFQNRRARWKTKQLEREYESLKKQFEALKVDNDALKVQNQKLHAELQA 139
                  69***************************************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.42E-1935105IPR009057Homeodomain-like
PROSITE profilePS5007116.42243103IPR001356Homeobox domain
SMARTSM003897.3E-1746107IPR001356Homeobox domain
CDDcd000864.53E-1548104No hitNo description
PfamPF000466.5E-1549101IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-1855102IPR009057Homeodomain-like
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PfamPF021838.3E-14103140IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGSHQFLGGG GPLMLKRSMS FSGIENKCGG DGDDDLSDDG FGFQFGEKKK RLNIEQVKAL  60
EKSFELGNKL EPERKVQLAK ALNLQPRQIA IWFQNRRARW KTKQLEREYE SLKKQFEALK  120
VDNDALKVQN QKLHAELQAL IKGKEYYCEE DGAIISNLNK KEAGEGSWSN NNNNNNGCSD  180
NNNISSSDIN LDLSTTPIIN TSPVSSQNAK TTLESNNDNS LKPNNNIIQL LQYSPSSSSR  240
PQGIPHQDEG LCNMFHHQIE DQQNLWPWPE HQPHNNFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.FQ6XD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015962414.10.0homeobox-leucine zipper protein HAT7 isoform X1
SwissprotQ004661e-66HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A445DBT51e-175A0A445DBT5_ARAHY; Uncharacterized protein
STRINGXP_004489381.11e-90(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.16e-55homeobox 3