PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.FNR52
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 1650aa    MW: 183321 Da    PI: 6.3811
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.FNR52genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23129230199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  Aradu.FNR52 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 222
                  99*****************************96555555..8************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Aradu.FNR52 223 LLLGIRRA 230
                  9****997 PP

2Auxin_resp118.55.4e-39255338183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Aradu.FNR52 255 AAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 338
                  79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-48114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-42122244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-21128229No hitNo description
PROSITE profilePS5086312.52129231IPR003340B3 DNA binding domain
SMARTSM010192.1E-24129231IPR003340B3 DNA binding domain
PfamPF023621.8E-21129230IPR003340B3 DNA binding domain
PfamPF065073.6E-34255338IPR010525Auxin response factor
PfamPF023093.9E-6753845IPR033389AUX/IAA domain
SuperFamilySSF542776.47E-8754841No hitNo description
PROSITE profilePS5174523.937763847IPR000270PB1 domain
PROSITE profilePS513758.02410081042IPR002885Pentatricopeptide repeat
PfamPF015350.04710111040IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.4E-410111041IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.84210431078IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.13310791113IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.62211141148IPR002885Pentatricopeptide repeat
PfamPF015350.01211171146IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.3E-711171150IPR002885Pentatricopeptide repeat
PfamPF130416.8E-1211481197IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.25711491183IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-611521185IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.08211841218IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.5E-611871220IPR002885Pentatricopeptide repeat
PfamPF128545.8E-812141245IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.33912191249IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001612221245IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.29912501285IPR002885Pentatricopeptide repeat
PfamPF015352.2E-412521274IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.4E-712531286IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.59212861320IPR002885Pentatricopeptide repeat
PfamPF130413.9E-1612881334IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.1E-912881320IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.81613211355IPR002885Pentatricopeptide repeat
SuperFamilySSF484528.72E-613221556IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007565.4E-913231356IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.109.0E-813251561IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137514.44713561390IPR002885Pentatricopeptide repeat
PfamPF130411.3E-1813561404IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.5E-1213601392IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.09313911425IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.0E-513931426IPR002885Pentatricopeptide repeat
PfamPF130415.3E-1714261473IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.16714261460IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.7E-814281461IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.28814611495IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.1E-714631497IPR002885Pentatricopeptide repeat
PfamPF128546.3E-1114911523IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.68214961530IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.7E-914991532IPR002885Pentatricopeptide repeat
PfamPF130411.9E-1615301578IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.99815311565IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.4E-1015331567IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.08415661600IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.4E-415681602IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0032543Biological Processmitochondrial translation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1650 aa     Download sequence    Send to blast
MKLSSSGFNQ PAEEEGEKKT LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNR  60
EADAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQEQKD VYLLPAELGT  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY TQQPPAQELI ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLTKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDSVRWP NSHWRSVKVG WDESTAGDRQ PRVSLWEIEP  360
LTTFPMYPSP FPLRLRRPWP SGLPSLYGLK DGGDMGINSP FMWLQSGLGD QGMQSLNFQG  420
LGVTPWLQPR FDASMPGLQP ELYQAMTSAA FQEMRTMDPS KPSSQSLLQF QQPSNVPSAF  480
ASELQRQVLP QSQPQNTLLQ NFQEHQTPAP SQISPQQLLR YHPYSDQRQQ QQQLKTVPVQ  540
QQLQNLVSPL SNFAAATQPQ SPSLQALASH CQQQSFPEPI RNHVSSSDVS PMQSLLGSFS  600
QDGASQLLNR NGPNSVLSSG ALLPKQITVE SQVPSAGAQC VLPQVENLGT SQSNVSELTA  660
LPPFPGREHS AYQGAADPHS NLLFGINIDP SSLMLQNGMQ NLRNLGNVND SLSMTFSAPN  720
CGGANAPGSD FPLSSNVTTS SCVDESGFLQ SSENVDQSNT PTRTFVKVHK SRSLGRSLDI  780
SKFSSYDELR SELARLFGLE GQLEDPQRSG WQLVFVDREN DILLLGDDPW QEFVNSVWSI  840
KILSPLEVQQ MGKGVVPSTS APSAQKLSST ATTNSCDNNY GVGKQELRSS SNGMASMGSA  900
SRKEPLDRIH LEGTILFSVK IASFPLCTTT TTTTLGAKKD QFWDSAEEES SDNEWERLLK  960
PFGLKQLRSS LSPISPSQLC KLLLLPLDIP TTMELFEKAG SQNGYSHSFD VYCILIDKLG  1020
SNGDFKTIDL LLKQMKEEGI VFKESIFIMI MRYYGKAGLP GQATRLLLDM WGVYDCEPSF  1080
KSYNVVLEIL VAGNCPKVAP NVFYDMLNRG VSPTVSTFGV VMKALCMINE VDSACSLLKD  1140
MMKHGCVPNS IIYQTLIHTL SQNNRVNDAM KLLEEMFLMG CEPDVQTFND VIYGLCRASR  1200
IHEAAKLLDR MLLRGFSADE MTYGFLINGL CRTGHVDEAR ALLNKIPNLN AVHYNTLING  1260
YVARGRFDEA KDLLYNNMVI SGYKPDGFTF NIMIDGFCKK GRLVSALEFL HEMVTKGFEP  1320
CVVTYTILIN GFCKQGRLDE AAEVVNAMWA KGLSLNTVGY NCLISALCKD GRTEEALQLF  1380
GEMSSKGCKP DIYTFNSLIF GMCNDDNMEE ALRLYRDMFM EGVIANTVTY NTLIHAFIRR  1440
GSIQQAFKLV DEMIFRGCPL DNITYMTLIK ALCMAGAVEK GLALFEEMLG KGIFPDTNCC  1500
NILINAFCRI GKVNDALQFL REMIHRGLIP DIVTYNCLIN GLCKMGHLQE ALNLFNRLQA  1560
EGMRPDAITY NTLVSRYCYE GLFNEACLMM YKGVDNGFVP NEITWYILLN YFARVLRGVG  1620
PSSRYTDVRI QIFFLGLFGA DRCPQGATCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581735947388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015973235.10.0PREDICTED: auxin response factor 6-like
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A0S3RJP70.0A0A0S3RJP7_PHAAN; Auxin response factor
STRINGGLYMA14G03650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8