PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.FJ441
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 204aa    MW: 22520.9 Da    PI: 8.5088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.FJ441genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.7e-105195554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Aradu.FJ441 51 HSIAERLRRERIAERMKALQELVPSiN------KTDRAAMLDEIVDYVKFL 95
                 99***********************77......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.43E-1044100No hitNo description
SuperFamilySSF474591.57E-1544105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1264695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1548106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-75195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-1152101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSFILDLRRL ALQAFQRQQA PNPVSVTALP QQPPGIRPRV RARRGQATDP HSIAERLRRE  60
RIAERMKALQ ELVPSINKTD RAAMLDEIVD YVKFLRLQVK VLSMSRLGGA GAVAQLVADV  120
PLSAVEQGEE IEGGGNNEQA WEKWSNDGTE QQVAKLMEED VGAAMQFLQS KALCIMPISL  180
ASAIFRMPPS EPSSLIKPES NSHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.FJ441
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015940064.11e-136transcription factor UNE12 isoform X1
RefseqXP_025619248.11e-136uncharacterized protein LOC112710959 isoform X1
SwissprotO227688e-83UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A445BJY51e-136A0A445BJY5_ARAHY; Uncharacterized protein
TrEMBLA0A445BJZ81e-134A0A445BJZ8_ARAHY; Uncharacterized protein
STRINGXP_004496017.11e-111(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]