PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.F19SY
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 236aa    MW: 25391 Da    PI: 8.0977
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.F19SYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.61.3e-302103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e
  Aradu.F19SY   2 SCNGCRVLRKGCSESCILRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVE 99 
                  6*********************9999777889****************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Aradu.F19SY 100 TVLR 103
                  9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.921107IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISNVPEPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGSLRPM PELLGLDAPV  120
PVAVDAGSEG EVTCADARKL RDPNPSPNIR FTSSRSGKDS SGGKRKRSEE LMMTTADLNL  180
RLTPSAVHSG CRQEIRRPGT PSMNSEESVT TMACLESGLG DNYAHGGDRK VLNLFI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.F19SY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963845.11e-174LOB domain-containing protein 37
RefseqXP_025698609.11e-174LOB domain-containing protein 37
SwissprotQ9SZE81e-83LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A444WTZ51e-173A0A444WTZ5_ARAHY; Uncharacterized protein
STRINGGLYMA01G40010.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-81LOB domain-containing protein 39