PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.E9V4C
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 236aa    MW: 26647.9 Da    PI: 8.4666
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.E9V4CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.95.1e-3497154259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp++v++tYeg+H+h+
  Aradu.E9V4C  97 EDGYRWRKYGQKAVKNSPFPRSYYRCTSGSCNVKKRVERSFTDPTIVVTTYEGQHTHP 154
                  8********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-3481156IPR003657WRKY domain
SuperFamilySSF1182902.48E-2988156IPR003657WRKY domain
PROSITE profilePS5081131.89291156IPR003657WRKY domain
SMARTSM007742.2E-3996155IPR003657WRKY domain
PfamPF031061.9E-2697154IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MMSVKMEDAS SLFSNNIPLW SVFDLCQETE EKGSLGFMDL LASPLSSSVS TTTTVDQAAP  60
SSQHADKVLK AKKTNGKKRE REARYAFMTK SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY  120
RCTSGSCNVK KRVERSFTDP TIVVTTYEGQ HTHPSPLLMP RSSSSSSSMP QTYFSHQHYL  180
HPHHQQLLFN TFPSLDFPPP PPPSSSQDTT NNNALFPLSD HGLLQDVLPS HMFKQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-2986156777Probable WRKY transcription factor 4
2lex_A7e-2986156777Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205740.11e-136PREDICTED: probable WRKY transcription factor 23
SwissprotO229009e-55WRK23_ARATH; Probable WRKY transcription factor 23
TrEMBLA0A0B2SGP52e-67A0A0B2SGP5_GLYSO; Putative WRKY transcription factor 23
TrEMBLI1NBE02e-67I1NBE0_SOYBN; Uncharacterized protein
STRINGGLYMA19G40560.15e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.17e-51WRKY DNA-binding protein 23