PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.D53YG
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 294aa    MW: 31964.3 Da    PI: 8.2771
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.D53YGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.21.6e-304105197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++dC+++p++     +++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e
  Aradu.D53YG   4 SCNGCRVLRKGCSEDCTIRPCLdwiksAESQANATLFLAKFYGRAGLINLINAGPNHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVE 101
                  6*********************9999777889****************************************************************99 PP

       DUF260  94 lall 97 
                  ++l 
  Aradu.D53YG 102 AVLK 105
                  8875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4923109IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCT IRPCLDWIKS AESQANATLF LAKFYGRAGL INLINAGPNH  60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGLPIT PINSELAESG  120
RGPPFKAHDI RHVSKPHNNT VTVASHETKR VKTRSRIKKP KVAEVAKRAS SHESSLSHER  180
MEAVATAAEG ESKEIESDVS VETTTTTTTV RFHDEPDSDA KGRGGSAEVC GNEVGLELTL  240
GFETVSREHH DVVVPMKKRR IDLKDFCGGV SSDNGSCKME LGLQFQAFNG SVLT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.D53YG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946431.10.0LOB domain-containing protein 40
RefseqXP_025624468.10.0LOB domain-containing protein 40
SwissprotQ9M8863e-99LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A445B2580.0A0A445B258_ARAHY; Uncharacterized protein
STRINGGLYMA19G06280.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-100LOB domain-containing protein 41