PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.D4D3B
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 429aa    MW: 47196.3 Da    PI: 9.7117
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.D4D3BgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP155.43.3e-481182801134
          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec.eaes 77 
                  aa+kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikel+++                    s+ s+s+c e++ 
  Aradu.D4D3B 118 AAAKKDRHSKIYTAQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELARSknhsasdeaeagagagannkSFASSSDCdENDF 215
                  689**************************************************************887777777777777777666666677763333 PP

          TCP  78 ssssasnsssg........kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                  ++ s +n++ +        +++++ ++ +++++sa ++++++kesr+karararert++km+++ 
  Aradu.D4D3B 216 EVLSRNNHHRHqqglvrsdARERKLKNAQQKEASACNVRAKMKESREKARARARERTSNKMCNSI 280
                  3333333333368899974444444477788888888899999*******************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-43120278IPR005333Transcription factor, TCP
PROSITE profilePS5136936.525121179IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.607258275IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MFPSTTYSYS TGPYPCFPSS SSSYPLFPFL NPENNASSSS ATTATNNNNN NNLLHDPSLC  60
VPYIPIPEAL TNLATVVDNT TNLAASSSMP KQQDLNGGGG GGAHHHFGIS SLLTKKPAAA  120
KKDRHSKIYT AQGLRDRRVR LSIEIARKFF DLQDMLGFDK ASNTLDWLFT KSKKAIKELA  180
RSKNHSASDE AEAGAGAGAN NKSFASSSDC DENDFEVLSR NNHHRHQQGL VRSDARERKL  240
KNAQQKEASA CNVRAKMKES REKARARARE RTSNKMCNSI MGNSSSSSGK VLELKKRCPA  300
PSENPHHLGG AEVSQTRDDF NVIEESIVIK RKLKQPSMMS SSHHHHHHHH QLNLPIPNNN  360
KEASFNNNSD NYHPGNYTNL SPNWDNANGP ASTANNRSNF CAIASMNLST GLQIFGKSWE  420
ECTNPSRLH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.D4D3B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946347.10.0transcription factor DICHOTOMA-like
TrEMBLA0A445B2550.0A0A445B255_ARAHY; Uncharacterized protein
STRINGXP_007151756.11e-119(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-29TCP family protein