PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C90G3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 323aa    MW: 35084.8 Da    PI: 10.4712
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C90G3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31241298359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+++WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+++dpk++++tYegeH+h+
  Aradu.C90G3 241 DEFSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAQDDPKMLIVTYEGEHRHN 298
                  99***********************9888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.1E-17194237IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.4E-32227298IPR003657WRKY domain
PROSITE profilePS5081130.986234300IPR003657WRKY domain
SuperFamilySSF1182901.96E-26237299IPR003657WRKY domain
SMARTSM007741.0E-37239299IPR003657WRKY domain
PfamPF031067.7E-27241297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAVDLVGVPR MRMEQQEQVA IQEAASAGLK SMEHLIRLLS SQSQSHSPST SSSPLPNNNN  60
NLNCSQLTDF TVSKFKQVIN LLNRTGHARF RRAPPQQQPS PPPQAQPGTT TAFTLDFHKP  120
TILNSKPAVN KDVDQEMELS ISPPVSTTTS STFMSSITGD ASVSDGKIGP FLTLPAPPPP  180
PVASGKPPLS SSHRKRCHDA TLSGKASSSA HCHCSKRRKS RVKRTIRVPA ISSKIADIPP  240
DEFSWRKYGQ KPIKGSPYPR GYYKCSTVRG CPARKHVERA QDDPKMLIVT YEGEHRHNPQ  300
PHSPETAGTP AVTSAGGFSL RSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22227301275WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954423.10.0PREDICTED: probable WRKY transcription factor 11
SwissprotQ9SV151e-108WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLI1LVK71e-125I1LVK7_SOYBN; Uncharacterized protein
STRINGGLYMA13G00380.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13143498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-77WRKY DNA-binding protein 11