PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.BY2T1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 67aa    MW: 7535.62 Da    PI: 4.6898
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.BY2T1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS38.12.2e-12157319374
         GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++eaGF    l+e++ + a++llrk++ +++++vee+++++ l Wk++++ ++S+W+
  Aradu.BY2T1   1 MKEAGFVGGMLGEDTIDGARALLRKYDsNWEMKVEEDNKCVGLFWKGQAVSFCSVWK 57 
                  899************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035147.8E-10157IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MKEAGFVGGM LGEDTIDGAR ALLRKYDSNW EMKVEEDNKC VGLFWKGQAV SFCSVWKLDG  60
GEKQVYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939255.16e-41PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC81e-26NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLV7AT917e-30V7AT91_PHAVU; Uncharacterized protein
STRINGGLYMA16G01020.13e-29(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.16e-21GRAS family protein