PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.BY2T1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 67aa    MW: 7535.62 Da    PI: 4.6898
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.BY2T1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS38.12.2e-12157319374
         GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++eaGF    l+e++ + a++llrk++ +++++vee+++++ l Wk++++ ++S+W+
  Aradu.BY2T1   1 MKEAGFVGGMLGEDTIDGARALLRKYDsNWEMKVEEDNKCVGLFWKGQAVSFCSVWK 57 
                  899************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035147.8E-10157IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MKEAGFVGGM LGEDTIDGAR ALLRKYDSNW EMKVEEDNKC VGLFWKGQAV SFCSVWKLDG  60
GEKQVYL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.BY2T1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939255.11e-40nodulation-signaling pathway 1 protein
RefseqXP_025618389.11e-40nodulation-signaling pathway 1 protein
SwissprotQ4VYC82e-25NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A445BMU33e-39A0A445BMU3_ARAHY; Uncharacterized protein
STRINGXP_007135437.15e-29(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.16e-21GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]