PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.BB4JP
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 369aa    MW: 40332.3 Da    PI: 5.261
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.BB4JPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.6e-31171229259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY+ eHnh+
  Aradu.BB4JP 171 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRTDPTMFIVTYTAEHNHP 229
                  79*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-30163231IPR003657WRKY domain
PROSITE profilePS5081134.635165231IPR003657WRKY domain
SuperFamilySSF1182907.32E-26168231IPR003657WRKY domain
SMARTSM007742.4E-36170230IPR003657WRKY domain
PfamPF031061.1E-25172229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEMELDWDLH AVVRGCSTLT SSSSSSSSSS SSSGFGYFYS QASPSSVLDT EDQHQQQGIT  60
NNVMSFSAAS YSYPFGPRTA IEELHELCKP FFTKSLPQQQ QSLQASSPLS SFSVAPPPPP  120
PKPVHAQEKQ QRSNTNKHPH PGGDSVNTPR SKRRKNQLKR VCQVPVENLS SDIWAWRKYG  180
QKPIKGSPYP RGYYRCSSSK GCLARKQVER NRTDPTMFIV TYTAEHNHPA PTHRNSLAGS  240
TRQKPLTPQA AAATTTNGGE SDEKALTPTK SASPDISVAE EEALPQHCEK SSVSREEKEE  300
DLADDDDDEF GLSDMVIPDD FFDSFDELKE ITGIDDDGIR GDNFFVDPFS AIAMPSWVAN  360
SAATAAGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-171682311577Probable WRKY transcription factor 4
2lex_A2e-171682311577Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753441e-92EU375344.1 Glycine max transcription factor (WRKY10) mRNA, complete cds.
GenBankBT0932951e-92BT093295.1 Soybean clone JCVI-FLGm-17I1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015961879.10.0PREDICTED: WRKY transcription factor 22
TrEMBLA0A0R4J5X01e-117A0A0R4J5X0_SOYBN; Uncharacterized protein
STRINGGLYMA18G47300.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-67WRKY family protein