PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.B7RDX
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 256aa    MW: 29224 Da    PI: 4.6087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.B7RDXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-135597754
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   Er+RR+++N++++ Lr ++P+      +K++Ka+i + A++YI +L
  Aradu.B7RDX 55 VSERNRRKKLNERLFALRAVVPNI-----TKMDKASIIKDAIDYIEHL 97
                 57*********************7.....7*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1454897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-1750113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-1352102No hitNo description
Gene3DG3DSA:4.10.280.102.0E-1654114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1554103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-115597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEDCEDYKNY WETNMFLQTQ ELDSWQLDEA FSGGYYDSSS PDGGASSAAS NKNIVSERNR  60
RKKLNERLFA LRAVVPNITK MDKASIIKDA IDYIEHLHEQ EKRIQDEIME LESEKLKNPI  120
IAAAGDYDFE QDLPVLLRSK KKRPDNLLFD TSASSSSRNN INYFPIELID LRVTYKGEKI  180
FVVSLTCSKR TDTMVKLCEV FESLKLKIIT ANITSFSGTL SETLFVEADE EEKDHLQIRI  240
QTAIAALNDP QSPMSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1353117966Transcription factor MYC2
5gnj_B2e-1353117966Transcription factor MYC2
5gnj_E2e-1353117966Transcription factor MYC2
5gnj_F2e-1353117966Transcription factor MYC2
5gnj_G2e-1353117966Transcription factor MYC2
5gnj_I2e-1353117966Transcription factor MYC2
5gnj_M2e-1353117966Transcription factor MYC2
5gnj_N2e-1353117966Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.B7RDX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015973120.10.0transcription factor bHLH35
SwissprotQ2HIV92e-88BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A445AUT41e-161A0A445AUT4_ARAHY; Uncharacterized protein
STRINGXP_004487998.11e-126(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-79bHLH family protein