PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.ATP30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 487aa    MW: 54204.9 Da    PI: 4.9807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.ATP30genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64.1e-12298339854
                  HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++++RR+++N++++ Lr+l+P++     +K++ a+++  A++YI++L
  Aradu.ATP30 298 IDKQRREQLNDKYQILRSLIPSP-----TKVDRASVVGDAIDYIREL 339
                  689********************.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.865290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-13293352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9298339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-10298351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-10298339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSSSGAMQKK HEENSFLDTK TMAEGSDPSP SPTNMVAAAD EGNTENSNEE NLNLSLDEFY  60
HQNHNPPPQT TEGVSTFENG TSSISMDIEN TQNLSLNIGN SYSNKGTTTP LVQEIVIDHD  120
DAFHYEKSNW DSTIHELLDL GFSNHNENQQ AHDHQQFQLC EAQNCSQSYH SSDLLQLHLN  180
PNQIPCITNP IQNNTPNFQH SMGFLGDLPV GSDYDTSLHL NPAFGVGELF PSLPHGYTRL  240
TDSRSGFLFG GGDEMEGNGA CYQDGDGSQV DIGVMEFNRA RACSVGGRGR RGQGTMPIDK  300
QRREQLNDKY QILRSLIPSP TKVDRASVVG DAIDYIRELI RTVNELKSLV EKKRIGRERF  360
KRHKDENDAS ESCNIKPYGD GSIRTSWLQR KSKDSEVDVR IIDDEVIIKM VQRKKINCML  420
FVPKVLDELQ LDLHHVAGGH VGEYCSFLFN SKIIEGSSVY ASAIANRVIE VMDTQYAAAA  480
VPHNSSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.ATP30
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015959770.10.0transcription factor bHLH91-like
RefseqXP_016196526.10.0transcription factor bHLH91-like
RefseqXP_020976612.10.0transcription factor bHLH91-like
RefseqXP_020995879.10.0transcription factor bHLH91-like
RefseqXP_025646693.10.0transcription factor bHLH91-like
RefseqXP_025646694.10.0transcription factor bHLH91-like
SwissprotQ84TK13e-72BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A444ZGR70.0A0A444ZGR7_ARAHY; Uncharacterized protein
STRINGXP_007163873.11e-170(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.18e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]