PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.9T4H8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 228aa    MW: 25821.9 Da    PI: 4.7372
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.9T4H8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.31.9e-3391611128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.................................kvkaeekewyfFskrd 65 
                  lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++Pw+L+                                  ++ ae ++wy++s+r 
  Aradu.9T4H8   9 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLDLYPFDPWELDGiilslcsntcmhiarelklmntimcvsvcvcagRALAEGNQWYYYSRRT 105
                  79*************************999.99**************956899*************99999999988887664455889*****9984 PP

          NAM  66 kkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +nr+t++gyW+  g +++v+s+ +++ vg+kk  vfy g+ap+g++t+W+m+eyrl
  Aradu.9T4H8 106 --------QNRVTANGYWNPMGIEEAVVSNsSNRRVGIKKFYVFYVGEAPHGNRTNWIMQEYRL 161
                  ........58*****************99867778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-39654IPR003441NAC domain
PROSITE profilePS5100541.5449194IPR003441NAC domain
PfamPF023653.4E-2110161IPR003441NAC domain
SuperFamilySSF1019413.14E-3988192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGDSNNVNLP PGFRFYPTDE ELVVHFLQRK AALLPCHPDV IPDLDLYPFD PWELDGIILS  60
LCSNTCMHIA RELKLMNTIM CVSVCVCAGR ALAEGNQWYY YSRRTQNRVT ANGYWNPMGI  120
EEAVVSNSSN RRVGIKKFYV FYVGEAPHGN RTNWIMQEYR LSDSAASSSR SSTKRKSQPK  180
TDHSKWVVCR VHESDENDDD GDGDGTELSC LDEVFLSLDD LDEVSLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-34519716171NAC domain-containing protein 19
3swm_B2e-34519716171NAC domain-containing protein 19
3swm_C2e-34519716171NAC domain-containing protein 19
3swm_D2e-34519716171NAC domain-containing protein 19
3swp_A2e-34519716171NAC domain-containing protein 19
3swp_B2e-34519716171NAC domain-containing protein 19
3swp_C2e-34519716171NAC domain-containing protein 19
3swp_D2e-34519716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.9T4H8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029153137.11e-172NAC domain-containing protein 104 isoform X1
SwissprotQ8GWK61e-76NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A444ZTC41e-116A0A444ZTC4_ARAHY; Uncharacterized protein
STRINGGLYMA08G08010.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-72xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]