PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.9SR9S
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 407aa    MW: 44774.2 Da    PI: 4.6049
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.9SR9SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.7e-1882132155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +g+Wv eIr+p   + r  r +lg+f taeeAa a+++a+++++g
  Aradu.9SR9S  82 CNYRGVRQRT-WGKWVGEIREP---N-RgSRLWLGTFSTAEEAALAYDEAARAMYG 132
                  56*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1282132IPR001471AP2/ERF domain
CDDcd000183.51E-3482141No hitNo description
SMARTSM003806.3E-3883146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3283141IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2183141IPR016177DNA-binding domain
PROSITE profilePS5103222.2683140IPR001471AP2/ERF domain
PRINTSPR003671.1E-108495IPR001471AP2/ERF domain
PRINTSPR003671.1E-10106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGTYDQGSNN ISLVPLDSSR KRKSRSRRDG SRSVAETLQK WKKYNENLQS GKEEGKPTRK  60
APAKGSKKGC MKGKGGPQNS QCNYRGVRQR TWGKWVGEIR EPNRGSRLWL GTFSTAEEAA  120
LAYDEAARAM YGSSARLNFP HITDYSSIKE STKDSSTATT TSCSSSSAAT PAASDTTTVS  180
NHSEVCAFED VKEQVQVGKV NGTVVACHKA YDSVASPTSK VKQELLEEPE VLTDPGGVEI  240
QNLPRDEGQV AMGDVNKDQM DLSWIDNFDF EGGDYLKNFS VDELFQVDEL LGDIDKNPIE  300
DSSLMQALDF GQMDKGLDFS QMNFPDDSSH QADIPSSYLY QLENPDAKFL GSLPHVEQIP  360
SDADYGLDFL KAEEPENCNN GGEQEHRFID LKCLNNDPKG NNANVEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2083140260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823SRKRKS
22128RKSRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.9SR9S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0489330.0JQ048933.1 Arachis hypogaea ethylene-responsive element binding factor 6 (ERF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015973808.10.0dehydration-responsive element-binding protein 2C
TrEMBLA0A444YDP70.0A0A444YDP7_ARAHY; Uncharacterized protein
STRINGXP_004491005.11e-147(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-38ERF family protein