PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.970KM
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 881aa    MW: 100551 Da    PI: 9.3096
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.970KMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.7e-15896398
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 k  + +++ +s++l++p +f++++g +   s   t+  ++g  W+v+l  +k ++++++ +GW eFv+   + +g  +vF+++g+s+f   v++f+
  Aradu.970KM  8 KLVL-PSTIQSRQLRIPDTFLNRYGAD--LSSIATFSVPDGSIWRVRL--KKLDNGFWFVDGWAEFVQRYSIGVGYLIVFRYEGKSTF--IVRIFN 96
                 4444.55566667***********977..7779***************..********************************998888..999985 PP

2B354.22.6e-17289379498
                  E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  vl ps+  + ++++lp  fae+h +++  +   ++l+ ++gr+W v++ yr+++    l++GW eF+ +n+L egD++vF+l   +e  l v++fr
  Aradu.970KM 289 VLRPSYLYRGCIMYLPSCFAEKHlNEV--S-GFIKLQLSDGRQWPVRCLYRGGR--AKLSQGWFEFAIENNLGEGDVCVFELLPMKEVILQVTLFR 379
                  78899******************5333..3.369999999********665555..66***********************875566666676666 PP

3B343.65.3e-14483568597
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ++  +l+s++l++p +f++++gg+   s  + l  ++g sW+v l  +k ++++++ +GW eFv+   + +g  + F+++g+s+f   v++f
  Aradu.970KM 483 ILT-TTLQSKQLRVPDNFLRKYGGE--LSSFVNLSVPDGSSWRVGL--KKVDNKFWFIDGWAEFVQRYSIGVGYLLAFRYEGKSNF--SVHIF 568
                  444.4456667***********988..6778***************..*********************************99999..88887 PP

4B360.33.2e-19737828499
                  E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  vl ps+  + ++++lp  fae++ +g++     ++l++++gr+W v++ yr   gr  l++GW eF+ +n+L egD++vF+l + +e  l v++fr 
  Aradu.970KM 737 VLRPSYLYRGCIMYLPSCFAEKYlNGVSG---FIKLQHPDGRQWPVRCLYRT--GRAKLSQGWFEFAIDNNLGEGDVCVFELLRMKEVVLQVTIFRV 828
                  78899******************877744...5***************5555..5567***********************9988999999999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.45E-21396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-21396IPR015300DNA-binding pseudobarrel domain
CDDcd100178.32E-16496No hitNo description
PROSITE profilePS5086312.111598IPR003340B3 DNA binding domain
SMARTSM010193.3E-13698IPR003340B3 DNA binding domain
PfamPF023625.9E-13996IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-23278379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-23280380IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-21284379No hitNo description
PROSITE profilePS5086314.128286381IPR003340B3 DNA binding domain
SMARTSM010196.6E-16286381IPR003340B3 DNA binding domain
PfamPF023623.2E-15289379IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-22474569IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21475569IPR015300DNA-binding pseudobarrel domain
CDDcd100174.64E-16477569No hitNo description
PROSITE profilePS5086312.647478571IPR003340B3 DNA binding domain
SMARTSM010191.1E-13479571IPR003340B3 DNA binding domain
PfamPF023627.8E-12487568IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-25726827IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-25727828IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-23732827No hitNo description
PROSITE profilePS5086314.452734829IPR003340B3 DNA binding domain
SMARTSM010193.5E-20734829IPR003340B3 DNA binding domain
PfamPF023622.5E-17737827IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MPRPSFHKLV LPSTIQSRQL RIPDTFLNRY GADLSSIATF SVPDGSIWRV RLKKLDNGFW  60
FVDGWAEFVQ RYSIGVGYLI VFRYEGKSTF IVRIFNLATS EISYQSPVRS SNEGAYFANR  120
LKIFEELEDE DSAEYSSPSG LTPGALQNKF TPEKNYTPPP LQNLFNGSKL NSVNWGDSAN  180
TLSSRSANSL DSQLTRDIGV QFNAIEFKRS TDELKLRTSV GEKEKKAPRK KRKSDGQEPS  240
EDQEEEAEMR FRFYESASAR KRTVTAEERE RAVNAAKAFE PLNPFCRVVL RPSYLYRGCI  300
MYLPSCFAEK HLNEVSGFIK LQLSDGRQWP VRCLYRGGRA KLSQGWFEFA IENNLGEGDV  360
CVFELLPMKE VILQVTLFRV TEDDGFFSPP PLHQLQPSQN LVSQSKMLNA HMHQRLGSGT  420
KAVLLRPTVS SSGYFCVTGY SSEHQLHLEK TLVNKKQNLL CFEPSFLVFT PQKMPRPSFH  480
KVILTTTLQS KQLRVPDNFL RKYGGELSSF VNLSVPDGSS WRVGLKKVDN KFWFIDGWAE  540
FVQRYSIGVG YLLAFRYEGK SNFSVHIFNL ATAEINYQSP TRSSNEGSYF ANRLKIFEEM  600
EDEDFTESKP ALQNLFNGSK LNSVNWGEGG NALPAKSARD IGLQFNAIEF KKSTDELKLR  660
ASFEEKAKKT ARKKRKSEPG SAEGQEASDE QEEEREMRIR FYESASARKR TVTAEEREKA  720
VNEAKAFEPS NPFCRVVLRP SYLYRGCIMY LPSCFAEKYL NGVSGFIKLQ HPDGRQWPVR  780
CLYRTGRAKL SQGWFEFAID NNLGEGDVCV FELLRMKEVV LQVTIFRVTD EAEFLSPSLL  840
LTQNENQAKL LRSPMQQHLL TSPKRYIIHP SLEEGKRSVS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-6525283015144B3 domain-containing transcription factor VRN1
4i1k_B2e-6525283015144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.970KM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952087.10.0B3 domain-containing transcription factor VRN1
SwissprotQ8L3W11e-122VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A445E3T50.0A0A445E3T5_ARAHY; Uncharacterized protein
STRINGXP_007131905.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-67related to vernalization1 1
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]