PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.959KY
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 238aa    MW: 26566 Da    PI: 8.1682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.959KYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-1364110354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +k+L
  Aradu.959KY  64 RNHKEAEKRRRERINSHLARLRTLLPCN-----SKTDKASLLAKVVQRVKEL 110
                  58*************************8.....7************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.66361110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-1064113No hitNo description
PfamPF000101.2E-1064110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1565132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1465129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1167116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.0E-4149204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDHNNSDLFQ LLGAGGGGGY YPAAAMLMMD HHQHQVSSDD NMSAIETEAS HHHQQQDRAL  60
AALRNHKEAE KRRRERINSH LARLRTLLPC NSKTDKASLL AKVVQRVKEL KQQTSEIITE  120
FETLPSETDE ISVLSTADGG HGGLIFKASL CCEDRSDLIP ELIEILKSLH LKTLRAEMAT  180
LGGRTRNVLV VAADKEHNSI ESIHFLQNSL RSLLERSGSA DRSKRRRAMD RRFTPASS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.959KY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946519.11e-175transcription factor bHLH106
RefseqXP_025624368.11e-175transcription factor bHLH106
SwissprotO806744e-74BH106_ARATH; Transcription factor bHLH106
SwissprotQ9LET02e-74BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A445B2B41e-173A0A445B2B4_ARAHY; Uncharacterized protein
STRINGAES811731e-102(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]