PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.93TCK
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 354aa    MW: 39814 Da    PI: 10.3407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.93TCKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31288346360
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+k
  Aradu.93TCK 288 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 346
                  99***********************9988****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.6E-17239284IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-33274346IPR003657WRKY domain
PROSITE profilePS5081129.998281347IPR003657WRKY domain
SuperFamilySSF1182905.23E-27284346IPR003657WRKY domain
SMARTSM007744.7E-38286346IPR003657WRKY domain
PfamPF031065.5E-27288345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEEVEQANRL AVESCHRVLS ILSQPRDQVQ NRNLMVETGE AVLRFKKVVS LLQNGLGHAR  60
VRKHRKLQVP FSQSILLDNP NCFKNNNNNL NHDQSKKVVM LHENSVQELG SSTVRNSLSL  120
VNPSLELSSS AKSTINQQGS SSSHYQFLQQ QQIQQQRLLM QQQQQQQQMK NHAEMMFRRN  180
NSGINLNFDS TSCTPTMSST TRSFISSLSI DGSVANLDGS SFHLIGAPLS SDQNSQQHKR  240
KCSARGDEGS VKCGSSARCH CSKKRKHRVK RSIKVPAISN KLADIPPDDY SWRKYGQKPI  300
KGSPHPRGYY KCSSMRGCPA RKHVERCLEE PTMLIVTYEG EHNHPKLPTQ SANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20279348775WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312370.0KT031237.1 Glycine max clone HN_CCL_17 WRKY transcription factor (Glyma10g03820.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948503.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-130WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0B2RD390.0A0A0B2RD39_GLYSO; Putative WRKY transcription factor 21
TrEMBLA0A0R0KWS70.0A0A0R0KWS7_SOYBN; Uncharacterized protein
STRINGGLYMA02G15920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-109WRKY DNA-binding protein 21