PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.8C69J
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 502aa    MW: 55914.7 Da    PI: 6.4552
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.8C69JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.3e-07259280223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C++Cgk F+r  nL+ H+r H
  Aradu.8C69J 259 FCTICGKGFKRDANLRMHMRGH 280
                  6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-5256284No hitNo description
SMARTSM003550.0026258280IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03258285IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5259305IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
SMARTSM0035553307340IPR015880Zinc finger, C2H2-like
SMARTSM0035539345367IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MDRKESLCTN TWTEPSSLTN WGNGLQTNLS PDPSISDYGE RVEAPFKDFN QPSQMQSLLS  60
KNVIKIADQE NCPPNDSSQT SILQNWDASV MLNNLSFLEK KVHQLQELVC LIVSKKGQTF  120
RQPNELLTQE QQLITADLTS IIVQLISSAG SLLPSARHTL TNTSPLVQQL CQLQGITVPF  180
ASGSGQSSVQ PQNNGADKLS ESSLKNGLPN NCDLEQKYNV EEHELKDEED ADDGENLLPG  240
SYEILQLEKE EILAPHTHFC TICGKGFKRD ANLRMHMRGH GDEYKTAAAL AKPHKESESQ  300
PKLIKRYSCP YAGCKRNKDH KKFQPLKTIL CVKNHYKRTH CDKNYTCSRC HIKKFSVMAD  360
LKTHEKHCGK DKWLCSCGTT FSRKDKLFGH IALFQGHTPA IPMEDNKRTT GLPDQDNSKA  420
EVMSFSSGLN PSTENGVQNV MDVKGNIDDP ITCFSPLNFE ANFGGFNEFT QHQFDDGSEG  480
SFSFLIPGSF KSGEVSSSDN VV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.8C69J
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967889.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1
RefseqXP_020999321.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1
SwissprotQ9C8N51e-170STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A445CY520.0A0A445CY52_ARAHY; Uncharacterized protein
STRINGGLYMA10G35940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53403254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-163C2H2 family protein
Publications ? help Back to Top
  1. Kobayashi Y, et al.
    Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
    Plant Physiol., 2013. 163(1): p. 180-92
    [PMID:23839867]
  2. Yokosho K,Yamaji N,Ma JF
    Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    Plant Cell Physiol., 2014. 55(12): p. 2077-91
    [PMID:25273892]
  3. Geng X, et al.
    LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
    Plant J., 2017. 90(3): p. 491-504
    [PMID:28181322]
  4. Balzergue C, et al.
    Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
    Nat Commun, 2017. 8: p. 15300
    [PMID:28504266]
  5. Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
    Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
    Front Plant Sci, 2017. 8: p. 822
    [PMID:28567051]
  6. Jiang F, et al.
    Identification and characterization of suppressor mutants of stop1.
    BMC Plant Biol., 2017. 17(1): p. 128
    [PMID:28738784]
  7. Daspute AA, et al.
    Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
    Front Plant Sci, 2017. 8: p. 1358
    [PMID:28848571]
  8. Sharma A,Wai CM,Ming R,Yu Q
    Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
    Genome Biol Evol, 2017. 9(9): p. 2170-2190
    [PMID:28922793]
  9. Zhang Y, et al.
    The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 118
    [PMID:29491872]