PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.83N8C
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 348aa    MW: 38629.1 Da    PI: 7.1276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.83N8CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12197244355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Aradu.83N8C 197 QDHVIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 244
                  6799************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10197244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-17198261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-17198257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-12199248No hitNo description
SMARTSM003531.7E-14200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMQISSTNKY LPEFGMDESV FFHNQYPMMD SSTITSSPSP WPQILDDIDF NQIQESFSSA  60
SSPKSYTSNK RFNSSSAAGT TMPQSSFSPI ERPTKQQKNA YSHGISTNTT TTTSNEFMHS  120
NASSSVASYN HRHQQLYNNN PSSDQGNHVL RPKTESVCSE NLDFATVVSH ADYLSGYDKA  180
NKGSAAAATT RNPTQAQDHV IAERKRREKL SQRFIALSAI VPGLKKMDKA SVLGDAIKYL  240
KQLQEKVKIL EEQVAEKTVE SAIFVKRSIL FAEDNGSSSE ENPDQKIPEI EARISGKDVL  300
IRIHCDKHSG IVPKIINEIE KHDLSVQSSS FLPFGNNSLD ITIVAQRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13198253863Transcription factor MYC2
5gnj_B2e-13198253863Transcription factor MYC2
5gnj_E2e-13198253863Transcription factor MYC2
5gnj_F2e-13198253863Transcription factor MYC2
5gnj_G2e-13198253863Transcription factor MYC2
5gnj_I2e-13198253863Transcription factor MYC2
5gnj_M2e-13198253863Transcription factor MYC2
5gnj_N2e-13198253863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207ERKRRE
2203208RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.83N8C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015958673.10.0transcription factor bHLH18 isoform X1
RefseqXP_015958688.10.0transcription factor bHLH18 isoform X1
TrEMBLA0A445ESV50.0A0A445ESV5_ARAHY; Uncharacterized protein
STRINGGLYMA05G23291.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-53bHLH family protein