PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.7GX01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 220aa    MW: 25114.3 Da    PI: 5.7737
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.7GX01genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.71.2e-357102195
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                  +C aCk+lrr+C++dCv++pyf  ++ + +fa+vhk+FGasnv++ll +lp ++r+da+ +++y+A ar++dP+yG+v+ i  lqqq+++l+ e++
  Aradu.7GX01   7 SCGACKYLRRRCTRDCVFSPYFSYDEaSTHFAAVHKVFGASNVSRLLLHLPLHNRSDAAITITYQALARMHDPIYGCVAYIYVLQQQVASLQREID 102
                  6**********************988689***************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.3656108IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-347102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKGFGSSCGA CKYLRRRCTR DCVFSPYFSY DEASTHFAAV HKVFGASNVS RLLLHLPLHN  60
RSDAAITITY QALARMHDPI YGCVAYIYVL QQQVASLQRE IDDILGNNFM MKNSSCLGVE  120
NYCGSVHQSP MMNINNGIEY IVQEGTRSQC YKSQLANQFS SDEEIDREYE RLLLMDTDHL  180
LYGETDPISL EKFLSEIDQD VFLNHPWFKH NNNNADIIGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3531027105LOB family transfactor Ramosa2.1
5ly0_B2e-3531027105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.7GX01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956488.11e-166LOB domain-containing protein 33-like
RefseqXP_029153301.11e-166LOB domain-containing protein 33-like
SwissprotQ9LHS85e-54LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A445DQJ41e-165A0A445DQJ4_ARAHY; Uncharacterized protein
STRINGGLYMA02G41710.25e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-56LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]