PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.75YXP
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 427aa    MW: 47005.5 Da    PI: 5.8886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.75YXPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.3e-12228270754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++P+ +      K++ a+iL  A+eY+k+L
  Aradu.75YXP 228 MAERRRRKKLNDRLYMLRSVVPNiS------KMDRASILGDAIEYMKEL 270
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.088221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17224293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-14227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9227270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.04E-13228274No hitNo description
Gene3DG3DSA:4.10.280.105.0E-17228284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MNFFHQDNNN SNSFFHPSSF PSSMSFITNL HYPHQATPKP MFSSLLSGMM IPSNTTNNPL  60
FDQNGGNNNS CQQVMGFLEP QAFATSPSNA DATLLGGLGF PTSLNNSSSD PNNNSLSATM  120
SCVIPQEHEE EDKPPNKFAL FEGFHNNIEN NTGSSAVAAS SSSWMMNNNY DDYSDHDMVE  180
DMKMESESSS KNKNIIGENN NKNSNNNLNL QKGNNNKKKT GMPAKNLMAE RRRRKKLNDR  240
LYMLRSVVPN ISKMDRASIL GDAIEYMKEL LQKINDLHNE LQSMPPTAPA SSLHHPLTPT  300
NNNTATLPPA AASLPSRMMM KETASCPTSS LPTPNDQPAR VEVGLREGRG VNIHMFCDQK  360
PGLLLSTLTT LDNLGLDIQQ AVISFFNGFA MDIFRAEQCN EGQDLHPDQI KAALIEASEA  420
SGFHNII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14223280663Transcription factor MYC2
5gnj_B2e-14223280663Transcription factor MYC2
5gnj_E2e-14223280663Transcription factor MYC2
5gnj_F2e-14223280663Transcription factor MYC2
5gnj_G2e-14223280663Transcription factor MYC2
5gnj_I2e-14223280663Transcription factor MYC2
5gnj_M2e-14223280663Transcription factor MYC2
5gnj_N2e-14223280663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216235KKKTGMPAKNLMAERRRRKK
2229236ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.75YXP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015955708.10.0transcription factor ICE1-like
TrEMBLA0A445DTG01e-166A0A445DTG0_ARAHY; Uncharacterized protein
STRINGGLYMA05G38530.23e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2900722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.48e-68bHLH family protein