PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6X6KU
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 272aa    MW: 28704.4 Da    PI: 7.0626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6X6KUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-06124145223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +Cp+C+k+Fs++     H+r+H
  Aradu.6X6KU 124 TCPICSKTFSSWKGAFGHMRKH 145
                  6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEKNQSTSAS TTSLPSLSLS TPVTEPPSSP LVDQPNLSGE EEKLIILKTP EKILTDLTTN  60
NDTNGGGSLP PSPPPPSPPQ MMVSGAIATA VGGGAVVLGG SNIIGPVKRR KASEIIDPPS  120
GTPTCPICSK TFSSWKGAFG HMRKHPDRQY RGFFKPPTFP SASSKAATNA SGNRHEAAGE  180
EGSSADASGE VGEGGASPAV RNLLFDLNLP VEGELWRILA EKRQKHYQLL LTAMKEVVAR  240
QLREKEAEVE KAIWQNAKLE AHAAQLAAEA QV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6X6KU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963399.11e-152uncharacterized protein LOC107487295
RefseqXP_025650762.11e-152uncharacterized protein LOC112746843
RefseqXP_025703292.11e-152uncharacterized protein LOC112804077
TrEMBLA0A444WUV31e-151A0A444WUV3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.11e-15C2H2 family protein