PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6TN9T
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 179aa    MW: 19970.5 Da    PI: 6.7843
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6TN9TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.41.4e-4471061100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+++
  Aradu.6TN9T   7 PCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQ 104
                  7**********************************************************************************************999 PP

       DUF260  99 ee 100
                  +e
  Aradu.6TN9T 105 AE 106
                  87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.9186107IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-447104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGSGNSPCAS CKLLRRRCAK DCIFAPYFPS DDPQKFAIVH KVFGASNVSK MLQELPIHQR  60
ADAVSSLVYE ANARVRDPVY GCVGAISYLQ NQVSELQMQL AVAQAEILCI QMQHEPSVAA  120
AIPNPQQIME FQEQNNNNNE LTHHHHHHHQ YLNFAAASSS NVIHDSLSRE TFFGHDMVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015944263.11e-132PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW31e-76LBD12_ARATH; LOB domain-containing protein 12
TrEMBLM5X1C12e-93M5X1C1_PRUPE; Uncharacterized protein
STRINGPOPTR_0010s19180.17e-88(Populus trichocarpa)
STRINGGLYMA18G02780.18e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.18e-78LBD family protein