PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6S06R
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 251aa    MW: 28674.7 Da    PI: 6.6366
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6S06RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-183285356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k+++++ eq+++Le+ Fe  +++  e++ +LA++lgL+ rq+ +WFqNrRa++k
  Aradu.6S06R 32 KKRRLNMEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWK 85
                 456899***********************************************9 PP

2HD-ZIP_I/II129.91e-4131121191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+k kqlE+dy++Lkr+++a+k++n++L++++++L++++
  Aradu.6S06R  31 EKKRRLNMEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWKIKQLERDYDQLKRQFEAVKSDNDALHAQNQKLQAQI 121
                  69**************************************************************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-192288IPR009057Homeodomain-like
PROSITE profilePS5007116.9412787IPR001356Homeobox domain
SMARTSM003891.6E-183091IPR001356Homeobox domain
PfamPF000467.4E-163285IPR001356Homeobox domain
CDDcd000869.66E-163288No hitNo description
Gene3DG3DSA:1.10.10.604.0E-193985IPR009057Homeodomain-like
PRINTSPR000315.2E-65867IPR000047Helix-turn-helix motif
PROSITE patternPS0002706285IPR017970Homeobox, conserved site
PRINTSPR000315.2E-66783IPR000047Helix-turn-helix motif
PfamPF021832.0E-1587127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSFSGIDLGG VEEGNNNGDE ELSDDGSQIG EKKRRLNMEQ VKALEKSFEL GNKLEPERKM  60
QLARSLGLQP RQIAIWFQNR RARWKIKQLE RDYDQLKRQF EAVKSDNDAL HAQNQKLQAQ  120
ILALKNREAT TESINLNKDT EGSCSNRSEN SSEIKFDIST RTPTTTTTTT TTIVDSPLSS  180
KPFFPSSSSS TRPPHQLFQV SRPEIHLHQC HQQNNNNNNH VVAKEESLSS MFVAMDDQSG  240
FWPWLEQQHF N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987RRARWKIKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6S06R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015965467.10.0homeobox-leucine zipper protein ATHB-13 isoform X2
SwissprotQ8LC034e-95ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A444Z5I11e-131A0A444Z5I1_ARAHY; Uncharacterized protein
STRINGevm.model.supercontig_183.291e-112(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.17e-81HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]