PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6MF1G
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 393aa    MW: 43928 Da    PI: 8.9639
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6MF1GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP156.51.5e-48422051137
          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..............sec...eaesssss 81 
                  +a+kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWLl+++k+aikel+++++ss+              s +           
  Aradu.6MF1G  42 PAPKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLLTKSKRAIKELARSKNSSSgnnnggvannsfssS-SsdgA------- 131
                  589**************************************************************55555433333332211111.11221....... PP

          TCP  82 asnsssg........................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137
                        +                           + +   +++q+++++ ++++kesr+karararert++km++++k +
  Aradu.6MF1G 132 ------DddevdsvinqqqltdnidgtheqgGVDSLERRLRRDQQKEEESRAKMKESREKARARARERTSSKMCNSEKVQ 205
                  ......02233344444444566888888764444444667777777778*************************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-4444200IPR005333Transcription factor, TCP
PROSITE profilePS5136936.32445103IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.188180197IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MTNLAVADAM FKQEYFTAAA AGGSSHHHHH HYGMSSLITK RPAPKKDRHS KIHTSQGLRD  60
RRVRLSIEIA RKFFDLQDML GFDKASNTLE WLLTKSKRAI KELARSKNSS SGNNNGGVAN  120
NSFSSSSSDG ADDDEVDSVI NQQQLTDNID GTHEQGGVDS LERRLRRDQQ KEEESRAKMK  180
ESREKARARA RERTSSKMCN SEKVQDLKKK SPAMVMEEDP QILMQHQQLR APMIQPLEES  240
SMRSSPKLFQ PHHLAAAAGG GGGGGSSEVP RDDFNVIEES IVIRRKLKQS LMSSSSSSSN  300
NNHHQNHNVI PKEATNFNNN NSDYHCFPNL SSPNWEANAS AATNNGRSNV CTISSMNLST  360
MFCFLLLFFY FSIFLLGLQI FGKSWEECTN PHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6MF1G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150376e-54AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015962257.10.0transcription factor DICHOTOMA-like
RefseqXP_025696948.10.0transcription factor DICHOTOMA
TrEMBLA0A444WNB90.0A0A444WNB9_ARAHY; Uncharacterized protein
STRINGGLYMA13G07475.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-27TCP family protein