PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6M9JS
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 456aa    MW: 46997.6 Da    PI: 7.0969
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6M9JSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.58e-41421562101
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                  ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++          
  Aradu.6M9JS  42 TAPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaphtfh 139
                  5679*****************************************************************99988888888888555554444444444 PP

          TCP  89 ..........kaaksaakskksq 101
                                   + +++ 
  Aradu.6M9JS 140 aaalalahhhP------SYEEAF 156
                  44432222220......222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3947171IPR005333Transcription factor, TCP
PROSITE profilePS5136928.49648102IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MGGSMSSSTS SSSSSSNSTS SSTTIDANLA IATRSDDNQL QTAPKRSTKD RHTKVDGRGR  60
RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSTLNVSLR  120
SSGSTLSAPP SKSAPHTFHA AALALAHHHP SYEEAFHQHT ALLGFHPHHA QHQHLMTADQ  180
IAEALPGGAA DSSENYMRKR FREDLFKDES NHPSESQNNE SGGAGAAAAD GSSPKPFKTN  240
LQMQLQQQQP QPEGGGGGGG GGGSSGHGLL RQSNLVPATA MWAVAPAPAT AGAPGSTIWM  300
LPVTAGGAGG VATGAAASEA QMWPFAHQGG GGGGGGGGGG NNTLQGPLHL MPRFNLSPSG  360
GVEFQQEGRG GLQLGSMVMP AAQQQQQPPS QHLGLTMSES NLGMLAALNA YTRAGLNMNM  420
NMNINSSSSH HHHHQHQPPP PPQAADSGED GPNSSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6M9JS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015958806.10.0transcription factor TCP8
RefseqXP_015958807.10.0transcription factor TCP8
TrEMBLA0A444ZC140.0A0A444ZC14_ARAHY; Uncharacterized protein
STRINGEOX971601e-145(Theobroma cacao)
STRINGGLYMA16G00580.11e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.18e-58TCP family protein